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Clone missed some folders

Just cloned my Data Drive to another Drive (D to F). Both HDD's. 
Done successfully in the past. 
Using AOMEI Partition Asst Pro ver 10.5.0  on Windows 10.

All copied except for one directory and its sub folders, which are missing. 

Question is why, and how can one check the integrity of the clone without going through every folder and file? 

Help much appreciated, thanks.
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